PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490571.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 169aa    MW: 19071.4 Da    PI: 4.3333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.4e-1260142696
                     ..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     t+  v  +  ++lp+k  +e        +     + +   ++W++ +  ++++    +++ Wk+Fv++n+Lk+gD +vF+l++ s+ + ++kv
  XP_016490571.1  60 TKTTVKPHYGMYLPRKMNKELpaA----G--APAVLTCGRKKWDMFYYSNNNK----FSAEWKKFVDDNDLKVGDALVFELSECSTNKIHFKV 142
                     556666777788888887666431....2..234556788*******334444....7888*******************9854666555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-1651146IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-1352146IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.61655148IPR003340B3 DNA binding domain
CDDcd100179.93E-1758146No hitNo description
PfamPF023621.3E-959140IPR003340B3 DNA binding domain
SMARTSM010195.1E-759148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEQELQLSVE TAMESIPSSV HVSNHDDIST PEIESTGIEE IDNGEYWPLS GKPYVDIILT  60
KTTVKPHYGM YLPRKMNKEL PAAGAPAVLT CGRKKWDMFY YSNNNKFSAE WKKFVDDNDL  120
KVGDALVFEL SECSTNKIHF KVQILRGDFP SELLPEDEEG ATDANPIEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786634.11e-124PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_016490571.11e-124PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLM0ZNK43e-74M0ZNK4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000045239e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-08B3 family protein